============ PROCESS INFORMATION =============
||=====================Job description====================================||
You will get an output cif file for a list of dictionary restraints
based on the input cif file
Your input cif file : SEC_def.cif
Your monomer name : SEC
The output dictionary file(cif) : SEC.cif_TMP/SEC.cif_cod.rst
||========================================================================||
The work mode is 11
NBDepth	1
inCifName	SEC_def.cif
libMolTabDir	/zata/ccp4-6.5/share/acedrg/tables
monoRootName	SEC
userOutName	SEC.cif_TMP/SEC.cif_cod.rst
Atom Name N bonding index 3
Its element type N

 Its ccp4 type NT2
Atom Name CA bonding index 3
Its element type C

 Its ccp4 type CH1
Atom Name CB bonding index 3
Its element type C

 Its ccp4 type CH2
Atom Name SE bonding index 0
Its element type Se

 Its ccp4 type SE
Atom Name C bonding index 2
Its element type C

 Its ccp4 type C
Atom Name O bonding index 0
Its element type O

 Its ccp4 type O
O atom  charge 0
connections 2
Atom Name OXT bonding index 2
Its element type O

 Its ccp4 type OH1

Atom 0 : 
Its ID : N
Its Chemical Type : N
Its CCP4 chemical type NT2
Its bonding index : 3
Its residue Name: SEC
Its connected atoms are : 
CA
H
H2
The coords for the atom are : 
-0.783
1.676
-0.339

Atom 1 : 
Its ID : CA
Its Chemical Type : C
Its CCP4 chemical type CH1
Its bonding index : 3
Its residue Name: SEC
Its connected atoms are : 
N
CB
C
HA
The coords for the atom are : 
-0.938
0.217
-0.405

Atom 2 : 
Its ID : CB
Its Chemical Type : C
Its CCP4 chemical type CH2
Its bonding index : 3
Its residue Name: SEC
Its connected atoms are : 
CA
SE
HB2
HB3
The coords for the atom are : 
0.042
-0.445
0.565

Atom 3 : 
Its ID : SE
Its Chemical Type : Se
Its CCP4 chemical type SE
Its bonding index : 0
Its residue Name: SEC
Its connected atoms are : 
CB
HE
The coords for the atom are : 
1.879
-0.092
-0.02

Atom 4 : 
Its ID : C
Its Chemical Type : C
Its CCP4 chemical type C
Its bonding index : 2
Its residue Name: SEC
Its connected atoms are : 
CA
O
OXT
The coords for the atom are : 
-2.349
-0.156
-0.027

Atom 5 : 
Its ID : O
Its Chemical Type : O
Its CCP4 chemical type O
Its bonding index : 0
Its residue Name: SEC
Its connected atoms are : 
C
The coords for the atom are : 
-3.03
0.619
0.602

Atom 6 : 
Its ID : OXT
Its Chemical Type : O
Its CCP4 chemical type OH1
Its bonding index : 2
Its residue Name: SEC
Its connected atoms are : 
C
HXT
The coords for the atom are : 
-2.848
-1.348
-0.389

Atom 7 : 
Its ID : H
Its Chemical Type : H
Its CCP4 chemical type H
Its bonding index : 0
Its residue Name: SEC
Its connected atoms are : 
N
The coords for the atom are : 
-1.373
2.134
-1.017

Atom 8 : 
Its ID : H2
Its Chemical Type : H
Its CCP4 chemical type H
Its bonding index : 0
Its residue Name: SEC
Its connected atoms are : 
N
The coords for the atom are : 
-0.969
2.018
0.592

Atom 9 : 
Its ID : HA
Its Chemical Type : H
Its CCP4 chemical type H
Its bonding index : 0
Its residue Name: SEC
Its connected atoms are : 
CA
The coords for the atom are : 
-0.732
-0.125
-1.419

Atom 10 : 
Its ID : HB2
Its Chemical Type : H
Its CCP4 chemical type H
Its bonding index : 0
Its residue Name: SEC
Its connected atoms are : 
CB
The coords for the atom are : 
-0.105
-0.037
1.565

Atom 11 : 
Its ID : HB3
Its Chemical Type : H
Its CCP4 chemical type H
Its bonding index : 0
Its residue Name: SEC
Its connected atoms are : 
CB
The coords for the atom are : 
-0.134
-1.521
0.582

Atom 12 : 
Its ID : HE
Its Chemical Type : H
Its CCP4 chemical type H
Its bonding index : 0
Its residue Name: SEC
Its connected atoms are : 
SE
The coords for the atom are : 
2.691
-0.839
1.084

Atom 13 : 
Its ID : HXT
Its Chemical Type : H
Its CCP4 chemical type H
Its bonding index : 0
Its residue Name: SEC
Its connected atoms are : 
OXT
The coords for the atom are : 
-3.757
-1.542
-0.123
For Bond : 0
It is in Residue: SEC
Its component atom1 N
Its component atom2 CA
For Bond : 1
It is in Residue: SEC
Its component atom1 N
Its component atom2 H
For Bond : 2
It is in Residue: SEC
Its component atom1 N
Its component atom2 H2
For Bond : 3
It is in Residue: SEC
Its component atom1 CA
Its component atom2 CB
For Bond : 4
It is in Residue: SEC
Its component atom1 CA
Its component atom2 C
For Bond : 5
It is in Residue: SEC
Its component atom1 CA
Its component atom2 HA
For Bond : 6
It is in Residue: SEC
Its component atom1 CB
Its component atom2 SE
For Bond : 7
It is in Residue: SEC
Its component atom1 CB
Its component atom2 HB2
For Bond : 8
It is in Residue: SEC
Its component atom1 CB
Its component atom2 HB3
For Bond : 9
It is in Residue: SEC
Its component atom1 SE
Its component atom2 HE
For Bond : 10
It is in Residue: SEC
Its component atom1 C
Its component atom2 O
For Bond : 11
It is in Residue: SEC
Its component atom1 C
Its component atom2 OXT
For Bond : 12
It is in Residue: SEC
Its component atom1 OXT
Its component atom2 HXT
Atom ID: N
Atom chemType: N
Atom chemType of COD classes: N
Atom ID: CA
Atom chemType: C
Atom chemType of COD classes: C
Atom ID: CB
Atom chemType: C
Atom chemType of COD classes: C
Atom ID: SE
Atom chemType: Se
Atom chemType of COD classes: Se
Atom ID: C
Atom chemType: C
Atom chemType of COD classes: c
Atom ID: O
Atom chemType: O
Atom chemType of COD classes: O
Atom ID: OXT
Atom chemType: O
Atom chemType of COD classes: o
Atom ID: H
Atom chemType: H
Atom chemType of COD classes: H
Atom ID: H2
Atom chemType: H
Atom chemType of COD classes: H
Atom ID: HA
Atom chemType: H
Atom chemType of COD classes: H
Atom ID: HB2
Atom chemType: H
Atom chemType of COD classes: H
Atom ID: HB3
Atom chemType: H
Atom chemType of COD classes: H
Atom ID: HE
Atom chemType: H
Atom chemType of COD classes: H
Atom ID: HXT
Atom chemType: H
Atom chemType of COD classes: H
Atom Name N bonding index 3
Its element type N

 Its ccp4 type NT2
Atom Name CA bonding index 3
Its element type C

 Its ccp4 type CH1
Atom Name CB bonding index 3
Its element type C

 Its ccp4 type CH2
Atom Name SE bonding index 0
Its element type Se

 Its ccp4 type SE
Atom Name C bonding index 2
Its element type C

 Its ccp4 type C
Atom Name O bonding index 0
Its element type O

 Its ccp4 type O
O atom  charge 0
connections 2
Atom Name OXT bonding index 2
Its element type O

 Its ccp4 type OH1
Atom N Its sp idx 3 CCP4 atom type is NT2
Atom CA Its sp idx 3 CCP4 atom type is CH1
Atom CB Its sp idx 3 CCP4 atom type is CH2
Atom SE Its sp idx 0 CCP4 atom type is SE
Atom C Its sp idx 2 CCP4 atom type is C
Atom O Its sp idx 0 CCP4 atom type is O
Atom OXT Its sp idx 2 CCP4 atom type is OH1
Atom H Its sp idx 0 CCP4 atom type is H
Atom H2 Its sp idx 0 CCP4 atom type is H
Atom HA Its sp idx 0 CCP4 atom type is H
Atom HB2 Its sp idx 0 CCP4 atom type is H
Atom HB3 Its sp idx 0 CCP4 atom type is H
Atom HE Its sp idx 0 CCP4 atom type is H
Atom HXT Its sp idx 0 CCP4 atom type is H
Set torsion angles around the bond of atom CA and N
Set torsion angles around the bond of atom CA and CB
Set torsion angles around the bond of atom C and CA
Set torsion angles around the bond of atom CB and SE
Set torsion angles around the bond of atom C and OXT
All torsions have been setup 
Torsion angle 0
Its atoms are : 
atom CB
atom CA
atom N
atom H
Torsion angle 1
Its atoms are : 
atom CB
atom CA
atom N
atom H2
Torsion angle 2
Its atoms are : 
atom C
atom CA
atom N
atom H
Torsion angle 3
Its atoms are : 
atom C
atom CA
atom N
atom H2
Torsion angle 4
Its atoms are : 
atom HA
atom CA
atom N
atom H
Torsion angle 5
Its atoms are : 
atom HA
atom CA
atom N
atom H2
Torsion angle 6
Its atoms are : 
atom N
atom CA
atom CB
atom SE
Torsion angle 7
Its atoms are : 
atom N
atom CA
atom CB
atom HB2
Torsion angle 8
Its atoms are : 
atom N
atom CA
atom CB
atom HB3
Torsion angle 9
Its atoms are : 
atom C
atom CA
atom CB
atom SE
Torsion angle 10
Its atoms are : 
atom C
atom CA
atom CB
atom HB2
Torsion angle 11
Its atoms are : 
atom C
atom CA
atom CB
atom HB3
Torsion angle 12
Its atoms are : 
atom HA
atom CA
atom CB
atom SE
Torsion angle 13
Its atoms are : 
atom HA
atom CA
atom CB
atom HB2
Torsion angle 14
Its atoms are : 
atom HA
atom CA
atom CB
atom HB3
Torsion angle 15
Its atoms are : 
atom O
atom C
atom CA
atom HA
Torsion angle 16
Its atoms are : 
atom O
atom C
atom CA
atom N
Torsion angle 17
Its atoms are : 
atom O
atom C
atom CA
atom CB
Torsion angle 18
Its atoms are : 
atom OXT
atom C
atom CA
atom HA
Torsion angle 19
Its atoms are : 
atom OXT
atom C
atom CA
atom N
Torsion angle 20
Its atoms are : 
atom OXT
atom C
atom CA
atom CB
Torsion angle 21
Its atoms are : 
atom HE
atom SE
atom CB
atom CA
Torsion angle 22
Its atoms are : 
atom HE
atom SE
atom CB
atom HB2
Torsion angle 23
Its atoms are : 
atom HE
atom SE
atom CB
atom HB3
Torsion angle 24
Its atoms are : 
atom CA
atom C
atom OXT
atom HXT
Torsion angle 25
Its atoms are : 
atom O
atom C
atom OXT
atom HXT
Atom Name N bonding index 3
Its element type N

 Its ccp4 type NT2
Atom Name CA bonding index 3
Its element type C

 Its ccp4 type CH1
Atom Name CB bonding index 3
Its element type C

 Its ccp4 type CH2
Atom Name SE bonding index 0
Its element type Se

 Its ccp4 type SE
Atom Name C bonding index 2
Its element type C

 Its ccp4 type C
Atom Name O bonding index 0
Its element type O

 Its ccp4 type O
O atom  charge 0
connections 2
Atom Name OXT bonding index 2
Its element type O

 Its ccp4 type OH1
Atom N Its sp idx 3 CCP4 atom type is NT2
Atom CA Its sp idx 3 CCP4 atom type is CH1
Atom CB Its sp idx 3 CCP4 atom type is CH2
Atom SE Its sp idx 0 CCP4 atom type is SE
Atom C Its sp idx 2 CCP4 atom type is C
Atom O Its sp idx 0 CCP4 atom type is O
Atom OXT Its sp idx 2 CCP4 atom type is OH1
Atom H Its sp idx 0 CCP4 atom type is H
Atom H2 Its sp idx 0 CCP4 atom type is H
Atom HA Its sp idx 0 CCP4 atom type is H
Atom HB2 Its sp idx 0 CCP4 atom type is H
Atom HB3 Its sp idx 0 CCP4 atom type is H
Atom HE Its sp idx 0 CCP4 atom type is H
Atom HXT Its sp idx 0 CCP4 atom type is H

Atom 0 : 
Its ID : N
Its Chemical Type : N
Its bonding index : 3
Its CCP4 atom type : NT2
Its residue Name: SEC
Its connected atoms are : 
CA
H
H2

Atom 1 : 
Its ID : CA
Its Chemical Type : C
Its bonding index : 3
Its CCP4 atom type : CH1
Its residue Name: SEC
Its connected atoms are : 
N
CB
C
HA

Atom 2 : 
Its ID : CB
Its Chemical Type : C
Its bonding index : 3
Its CCP4 atom type : CH2
Its residue Name: SEC
Its connected atoms are : 
CA
SE
HB2
HB3

Atom 3 : 
Its ID : SE
Its Chemical Type : Se
Its bonding index : 0
Its CCP4 atom type : SE
Its residue Name: SEC
Its connected atoms are : 
CB
HE

Atom 4 : 
Its ID : C
Its Chemical Type : C
Its bonding index : 2
Its CCP4 atom type : C
Its residue Name: SEC
Its connected atoms are : 
CA
O
OXT

Atom 5 : 
Its ID : O
Its Chemical Type : O
Its bonding index : 0
Its CCP4 atom type : O
Its residue Name: SEC
Its connected atoms are : 
C

Atom 6 : 
Its ID : OXT
Its Chemical Type : O
Its bonding index : 2
Its CCP4 atom type : OH1
Its residue Name: SEC
Its connected atoms are : 
C
HXT

Atom 7 : 
Its ID : H
Its Chemical Type : H
Its bonding index : 0
Its CCP4 atom type : H
Its residue Name: SEC
Its connected atoms are : 
N

Atom 8 : 
Its ID : H2
Its Chemical Type : H
Its bonding index : 0
Its CCP4 atom type : H
Its residue Name: SEC
Its connected atoms are : 
N

Atom 9 : 
Its ID : HA
Its Chemical Type : H
Its bonding index : 0
Its CCP4 atom type : H
Its residue Name: SEC
Its connected atoms are : 
CA

Atom 10 : 
Its ID : HB2
Its Chemical Type : H
Its bonding index : 0
Its CCP4 atom type : H
Its residue Name: SEC
Its connected atoms are : 
CB

Atom 11 : 
Its ID : HB3
Its Chemical Type : H
Its bonding index : 0
Its CCP4 atom type : H
Its residue Name: SEC
Its connected atoms are : 
CB

Atom 12 : 
Its ID : HE
Its Chemical Type : H
Its bonding index : 0
Its CCP4 atom type : H
Its residue Name: SEC
Its connected atoms are : 
SE

Atom 13 : 
Its ID : HXT
Its Chemical Type : H
Its bonding index : 0
Its CCP4 atom type : H
Its residue Name: SEC
Its connected atoms are : 
OXT

For atom N
class is N(CCCH)(H)2

For atom CA
class is C(CSeHH)(COO)(NHH)(H)

For atom CB
class is C(CCHN)(SeH)(H)2

For atom SE
class is Se(CCHH)(H)

For atom C
class is C(CCHN)(OH)(O)

For atom O
class is O(CCO)

For atom OXT
class is O(CCO)(H)

For atom H
class is H(NCH)

For atom H2
class is H(NCH)

For atom HA
class is H(CCCN)

For atom HB2
class is H(CSeCH)

For atom HB3
class is H(CSeCH)

For atom HE
class is H(SeC)

For atom HXT
class is H(OC)
libmol table should be /zata/ccp4-6.5/share/acedrg/tables
Clustering COD org bonds started at Tue Dec 23 13:24:54 2014
Finish clustering COD org bonds 
finished at Tue Dec 23 13:24:54 2014
it takes 0 seconds to finish group COD bonds 
Group COD bonds involving metal elements 
Bond between N and CA
 search a org-related bond c 
for target bond of atoms N and CA
chemType : C COD classes : C(CSeHH)(COO)(NHH)(H)
chemType : N COD classes : N(CCCH)(H)2
ha1 673 ha2 981
 a1NB2 4:3:3:1: a2NB2 4:1:1:
 a1NB C-4:C-3:N-3:H-1: a2NB C-4:H-1:H-1:
 a1C C(CSeHH)(COO)(NHH)(H) a2C N(CCCH)(H)2
atom 1 CH1  atom 2 NT2
Found all hashing codes
find 4:3:3:1:
 find 4:1:1:
iFind 3 A
The final target bond value is 1.48
Bond between N and H
 search a org-related bond c 
for target bond of atoms N and H
chemType : H COD classes : H(NCH)
chemType : N COD classes : N(CCCH)(H)2
ha1 887 ha2 981
 a1NB2 3: a2NB2 4:1:1:
 a1NB N-3: a2NB C-4:H-1:H-1:
 a1C H(NCH) a2C N(CCCH)(H)2
atom 1 H  atom 2 NT2
Found all hashing codes
find 3:
 find 4:1:1:
 find N-3:
 find C-4:H-1:H-1:
 find H(NCH)
Found exact matches of atom cod-classes 
The final target bond value is 0.905
Bond between N and H2
 search a org-related bond c 
for target bond of atoms N and H2
chemType : H COD classes : H(NCH)
chemType : N COD classes : N(CCCH)(H)2
ha1 887 ha2 981
 a1NB2 3: a2NB2 4:1:1:
 a1NB N-3: a2NB C-4:H-1:H-1:
 a1C H(NCH) a2C N(CCCH)(H)2
atom 1 H  atom 2 NT2
Found all hashing codes
find 3:
 find 4:1:1:
 find N-3:
 find C-4:H-1:H-1:
 find H(NCH)
Found exact matches of atom cod-classes 
The final target bond value is 0.905
Bond between CA and CB
 search a org-related bond c 
for target bond of atoms CA and CB
chemType : C COD classes : C(CSeHH)(COO)(NHH)(H)
chemType : C COD classes : C(CCHN)(SeH)(H)2
ha1 673 ha2 673
 a1NB2 4:2:1:1: a2NB2 4:3:3:1:
 a1NB C-4:Se-2:H-1:H-1: a2NB C-4:C-3:N-3:H-1:
 a1C C(CCHN)(SeH)(H)2 a2C C(CSeHH)(COO)(NHH)(H)
atom 1 CH1  atom 2 CH2
Found all hashing codes
find 4:2:1:1:
 find 4:3:3:1:
iFind 3 A
The final target bond value is 1.53
Bond between CA and C
 search a org-related bond c 
for target bond of atoms CA and C
chemType : C COD classes : C(CCHN)(OH)(O)
chemType : C COD classes : C(CSeHH)(COO)(NHH)(H)
ha1 673 ha2 699
 a1NB2 4:3:3:1: a2NB2 4:2:1:
 a1NB C-4:C-3:N-3:H-1: a2NB C-4:O-2:O-1:
 a1C C(CSeHH)(COO)(NHH)(H) a2C C(CCHN)(OH)(O)
atom 1 C  atom 2 CH1
Found all hashing codes
find 4:3:3:1:
 find 4:2:1:
 find C-4:C-3:N-3:H-1:
 find C-4:O-2:O-1:
iFind 5
The final target bond value is 1.52
Bond between CA and HA
 search a org-related bond c 
for target bond of atoms CA and HA
chemType : C COD classes : C(CSeHH)(COO)(NHH)(H)
chemType : H COD classes : H(CCCN)
ha1 673 ha2 887
 a1NB2 4:3:3:1: a2NB2 4:
 a1NB C-4:C-3:N-3:H-1: a2NB C-4:
 a1C C(CSeHH)(COO)(NHH)(H) a2C H(CCCN)
atom 1 CH1  atom 2 H
Found all hashing codes
find 4:3:3:1:
 find 4:
 find C-4:C-3:N-3:H-1:
 find C-4:
iFind 5
The final target bond value is 0.987
Bond between CB and SE
 search a org-related bond c 
for target bond of atoms CB and SE
chemType : C COD classes : C(CCHN)(SeH)(H)2
chemType : Se COD classes : Se(CCHH)(H)
ha1 621 ha2 673
 a1NB2 4:1: a2NB2 4:2:1:1:
 a1NB C-4:H-1: a2NB C-4:Se-2:H-1:H-1:
 a1C Se(CCHH)(H) a2C C(CCHN)(SeH)(H)2
atom 1 CH2  atom 2 SE
Found all hashing codes
The final target bond value is 1.98
Bond between CB and HB2
 search a org-related bond c 
for target bond of atoms CB and HB2
chemType : C COD classes : C(CCHN)(SeH)(H)2
chemType : H COD classes : H(CSeCH)
ha1 673 ha2 887
 a1NB2 4:2:1:1: a2NB2 4:
 a1NB C-4:Se-2:H-1:H-1: a2NB C-4:
 a1C C(CCHN)(SeH)(H)2 a2C H(CSeCH)
atom 1 CH2  atom 2 H
Found all hashing codes
find 4:2:1:1:
 find 4:
 find C-4:Se-2:H-1:H-1:
 find C-4:
iFind 5
The final target bond value is 0.981
Bond between CB and HB3
 search a org-related bond c 
for target bond of atoms CB and HB3
chemType : C COD classes : C(CCHN)(SeH)(H)2
chemType : H COD classes : H(CSeCH)
ha1 673 ha2 887
 a1NB2 4:2:1:1: a2NB2 4:
 a1NB C-4:Se-2:H-1:H-1: a2NB C-4:
 a1C C(CCHN)(SeH)(H)2 a2C H(CSeCH)
atom 1 CH2  atom 2 H
Found all hashing codes
find 4:2:1:1:
 find 4:
 find C-4:Se-2:H-1:H-1:
 find C-4:
iFind 5
The final target bond value is 0.981
Bond between SE and HE
 search a org-related bond c 
for target bond of atoms SE and HE
chemType : H COD classes : H(SeC)
chemType : Se COD classes : Se(CCHH)(H)
ha1 621 ha2 887
 a1NB2 4:1: a2NB2 2:
 a1NB C-4:H-1: a2NB Se-2:
 a1C Se(CCHH)(H) a2C H(SeC)
atom 1 H  atom 2 SE
Could not find the basic bond classes in Cod and CCP4-energy-type
for the dictionary bond of atoms SE and HE
chemType : H atom COD classes : H(SeC)
chemType : Se atom COD classes : Se(CCHH)(H)
The final target bond value is 0
Bond between C and O
 search a org-related bond c 
for target bond of atoms C and O
chemType : C COD classes : C(CCHN)(OH)(O)
chemType : O COD classes : O(CCO)
ha1 157 ha2 699
 a1NB2 3: a2NB2 4:2:1:
 a1NB C-3: a2NB C-4:O-2:O-1:
 a1C O(CCO) a2C C(CCHN)(OH)(O)
atom 1 C  atom 2 O
Found all hashing codes
find 3:
 find 4:2:1:
 find C-3:
 find C-4:O-2:O-1:
 find O(CCO)
Found exact matches of atom cod-classes 
The final target bond value is 1.21
Bond between C and OXT
 search a org-related bond c 
for target bond of atoms C and OXT
chemType : C COD classes : C(CCHN)(OH)(O)
chemType : O COD classes : O(CCO)(H)
ha1 111 ha2 699
 a1NB2 3:1: a2NB2 4:2:1:
 a1NB C-3:H-1: a2NB C-4:O-2:O-1:
 a1C O(CCO)(H) a2C C(CCHN)(OH)(O)
atom 1 C  atom 2 OH1
Found all hashing codes
find 3:1:
 find 4:2:1:
 find C-3:H-1:
 find C-4:O-2:O-1:
 find O(CCO)(H)
Found exact matches of atom cod-classes 
The final target bond value is 1.31
Bond between OXT and HXT
 search a org-related bond c 
for target bond of atoms OXT and HXT
chemType : H COD classes : H(OC)
chemType : O COD classes : O(CCO)(H)
ha1 111 ha2 887
 a1NB2 3:1: a2NB2 2:
 a1NB C-3:H-1: a2NB O-2:
 a1C O(CCO)(H) a2C H(OC)
atom 1 H  atom 2 OH1
Found all hashing codes
find 3:1:
 find 2:
 find C-3:H-1:
 find O-2:
 find O(CCO)(H)
Found exact matches of atom cod-classes 
The final target bond value is 0.888
Number of Bonds to be found 13
Number of Bonds found 12
Finish setDefaultCoordGeos() 
Clustering all COD angles started at Tue Dec 23 13:24:55 2014
Clustering COD org angles finished at Tue Dec 23 13:24:56 2014
it takes 1 seconds to finish group COD angles 
Finish groupCodOrgAngles() 
Finish groupCodMetAngles() 
Finish groupCodAnglesWithNonCenteredMetal() 
Angle between N(center) and CA and H
Atom1 N Its Cod class N(CCCH)(H)2 and Hashing 981
 Its codNBSymb C-4:H-1:H-1: its codNB2Symb 4:1:1:
Atom2 CA Its Cod class C(CSeHH)(COO)(NHH)(H) and Hashing 673
 Its codNBSymb C-4:C-3:N-3:H-1: its codNB2Symb 4:3:3:1:
Atom3 H Its Cod class H(NCH) and Hashing 887
 Its codNBSymb N-3: its codNB2Symb 3:
Found 4:1:1:
Found 4:3:3:1:
Found 3:
Found C-4:H-1:H-1:
not Found C-4:C-3:N-3:H-1: iFind5 
Target angle value : 110
Angle between N(center) and CA and H2
Atom1 N Its Cod class N(CCCH)(H)2 and Hashing 981
 Its codNBSymb C-4:H-1:H-1: its codNB2Symb 4:1:1:
Atom2 CA Its Cod class C(CSeHH)(COO)(NHH)(H) and Hashing 673
 Its codNBSymb C-4:C-3:N-3:H-1: its codNB2Symb 4:3:3:1:
Atom3 H2 Its Cod class H(NCH) and Hashing 887
 Its codNBSymb N-3: its codNB2Symb 3:
Found 4:1:1:
Found 4:3:3:1:
Found 3:
Found C-4:H-1:H-1:
not Found C-4:C-3:N-3:H-1: iFind5 
Target angle value : 110
Angle between N(center) and H and H2
Atom1 N Its Cod class N(CCCH)(H)2 and Hashing 981
 Its codNBSymb C-4:H-1:H-1: its codNB2Symb 4:1:1:
Atom2 H Its Cod class H(NCH) and Hashing 887
 Its codNBSymb N-3: its codNB2Symb 3:
Atom3 H2 Its Cod class H(NCH) and Hashing 887
 Its codNBSymb N-3: its codNB2Symb 3:
Found 4:1:1:
Found 3:
Found 3:
Found C-4:H-1:H-1:
Found N-3:
Found N-3:
Found N(CCCH)(H)2
Found H(NCH)
COD finds the exact value 108
the sigma value 3
Target angle value : 108
Angle between CA(center) and N and CB
Atom1 CA Its Cod class C(CSeHH)(COO)(NHH)(H) and Hashing 673
 Its codNBSymb C-4:C-3:N-3:H-1: its codNB2Symb 4:3:3:1:
Atom2 CB Its Cod class C(CCHN)(SeH)(H)2 and Hashing 673
 Its codNBSymb C-4:Se-2:H-1:H-1: its codNB2Symb 4:2:1:1:
Atom3 N Its Cod class N(CCCH)(H)2 and Hashing 981
 Its codNBSymb C-4:H-1:H-1: its codNB2Symb 4:1:1:
Found 4:3:3:1:
Found 4:2:1:1:
not Found 4:1:1: iFind3 
Target angle value : 112
Angle between CA(center) and N and C
Atom1 CA Its Cod class C(CSeHH)(COO)(NHH)(H) and Hashing 673
 Its codNBSymb C-4:C-3:N-3:H-1: its codNB2Symb 4:3:3:1:
Atom2 C Its Cod class C(CCHN)(OH)(O) and Hashing 699
 Its codNBSymb C-4:O-2:O-1: its codNB2Symb 4:2:1:
Atom3 N Its Cod class N(CCCH)(H)2 and Hashing 981
 Its codNBSymb C-4:H-1:H-1: its codNB2Symb 4:1:1:
Found 4:3:3:1:
Found 4:2:1:
not Found 4:1:1: iFind3 
Target angle value : 111
Angle between CA(center) and N and HA
Atom1 CA Its Cod class C(CSeHH)(COO)(NHH)(H) and Hashing 673
 Its codNBSymb C-4:C-3:N-3:H-1: its codNB2Symb 4:3:3:1:
Atom2 HA Its Cod class H(CCCN) and Hashing 887
 Its codNBSymb C-4: its codNB2Symb 4:
Atom3 N Its Cod class N(CCCH)(H)2 and Hashing 981
 Its codNBSymb C-4:H-1:H-1: its codNB2Symb 4:1:1:
Found 4:3:3:1:
Found 4:
Found 4:1:1:
not Found C-4:C-3:N-3:H-1: iFind4 
Target angle value : 109
Angle between CA(center) and CB and C
Atom1 CA Its Cod class C(CSeHH)(COO)(NHH)(H) and Hashing 673
 Its codNBSymb C-4:C-3:N-3:H-1: its codNB2Symb 4:3:3:1:
Atom2 CB Its Cod class C(CCHN)(SeH)(H)2 and Hashing 673
 Its codNBSymb C-4:Se-2:H-1:H-1: its codNB2Symb 4:2:1:1:
Atom3 C Its Cod class C(CCHN)(OH)(O) and Hashing 699
 Its codNBSymb C-4:O-2:O-1: its codNB2Symb 4:2:1:
Found 4:3:3:1:
Found 4:2:1:1:
Found 4:2:1:
Found C-4:C-3:N-3:H-1:
not Found C-4:Se-2:H-1:H-1: iFind5 
Target angle value : 110
Angle between CA(center) and CB and HA
Atom1 CA Its Cod class C(CSeHH)(COO)(NHH)(H) and Hashing 673
 Its codNBSymb C-4:C-3:N-3:H-1: its codNB2Symb 4:3:3:1:
Atom2 CB Its Cod class C(CCHN)(SeH)(H)2 and Hashing 673
 Its codNBSymb C-4:Se-2:H-1:H-1: its codNB2Symb 4:2:1:1:
Atom3 HA Its Cod class H(CCCN) and Hashing 887
 Its codNBSymb C-4: its codNB2Symb 4:
Found 4:3:3:1:
Found 4:2:1:1:
Found 4:
Found C-4:C-3:N-3:H-1:
not Found C-4:Se-2:H-1:H-1: iFind5 
Target angle value : 108
Angle between CA(center) and C and HA
Atom1 CA Its Cod class C(CSeHH)(COO)(NHH)(H) and Hashing 673
 Its codNBSymb C-4:C-3:N-3:H-1: its codNB2Symb 4:3:3:1:
Atom2 C Its Cod class C(CCHN)(OH)(O) and Hashing 699
 Its codNBSymb C-4:O-2:O-1: its codNB2Symb 4:2:1:
Atom3 HA Its Cod class H(CCCN) and Hashing 887
 Its codNBSymb C-4: its codNB2Symb 4:
Found 4:3:3:1:
Found 4:2:1:
Found 4:
Found C-4:C-3:N-3:H-1:
Found C-4:O-2:O-1:
Found C-4:
not Found C(CSeHH)(COO)(NHH)(H) iFind7 
Target angle value : 108
Angle between CB(center) and CA and SE
Atom1 CB Its Cod class C(CCHN)(SeH)(H)2 and Hashing 673
 Its codNBSymb C-4:Se-2:H-1:H-1: its codNB2Symb 4:2:1:1:
Atom2 SE Its Cod class Se(CCHH)(H) and Hashing 621
 Its codNBSymb C-4:H-1: its codNB2Symb 4:1:
Atom3 CA Its Cod class C(CSeHH)(COO)(NHH)(H) and Hashing 673
 Its codNBSymb C-4:C-3:N-3:H-1: its codNB2Symb 4:3:3:1:
Target angle value : 109
Angle between CB(center) and CA and HB2
Atom1 CB Its Cod class C(CCHN)(SeH)(H)2 and Hashing 673
 Its codNBSymb C-4:Se-2:H-1:H-1: its codNB2Symb 4:2:1:1:
Atom2 CA Its Cod class C(CSeHH)(COO)(NHH)(H) and Hashing 673
 Its codNBSymb C-4:C-3:N-3:H-1: its codNB2Symb 4:3:3:1:
Atom3 HB2 Its Cod class H(CSeCH) and Hashing 887
 Its codNBSymb C-4: its codNB2Symb 4:
Found 4:2:1:1:
Found 4:3:3:1:
Found 4:
not Found C-4:Se-2:H-1:H-1: iFind4 
Target angle value : 109
Angle between CB(center) and CA and HB3
Atom1 CB Its Cod class C(CCHN)(SeH)(H)2 and Hashing 673
 Its codNBSymb C-4:Se-2:H-1:H-1: its codNB2Symb 4:2:1:1:
Atom2 CA Its Cod class C(CSeHH)(COO)(NHH)(H) and Hashing 673
 Its codNBSymb C-4:C-3:N-3:H-1: its codNB2Symb 4:3:3:1:
Atom3 HB3 Its Cod class H(CSeCH) and Hashing 887
 Its codNBSymb C-4: its codNB2Symb 4:
Found 4:2:1:1:
Found 4:3:3:1:
Found 4:
not Found C-4:Se-2:H-1:H-1: iFind4 
Target angle value : 109
Angle between CB(center) and SE and HB2
Atom1 CB Its Cod class C(CCHN)(SeH)(H)2 and Hashing 673
 Its codNBSymb C-4:Se-2:H-1:H-1: its codNB2Symb 4:2:1:1:
Atom2 SE Its Cod class Se(CCHH)(H) and Hashing 621
 Its codNBSymb C-4:H-1: its codNB2Symb 4:1:
Atom3 HB2 Its Cod class H(CSeCH) and Hashing 887
 Its codNBSymb C-4: its codNB2Symb 4:
Target angle value : 109
Angle between CB(center) and SE and HB3
Atom1 CB Its Cod class C(CCHN)(SeH)(H)2 and Hashing 673
 Its codNBSymb C-4:Se-2:H-1:H-1: its codNB2Symb 4:2:1:1:
Atom2 SE Its Cod class Se(CCHH)(H) and Hashing 621
 Its codNBSymb C-4:H-1: its codNB2Symb 4:1:
Atom3 HB3 Its Cod class H(CSeCH) and Hashing 887
 Its codNBSymb C-4: its codNB2Symb 4:
Target angle value : 109
Angle between CB(center) and HB2 and HB3
Atom1 CB Its Cod class C(CCHN)(SeH)(H)2 and Hashing 673
 Its codNBSymb C-4:Se-2:H-1:H-1: its codNB2Symb 4:2:1:1:
Atom2 HB2 Its Cod class H(CSeCH) and Hashing 887
 Its codNBSymb C-4: its codNB2Symb 4:
Atom3 HB3 Its Cod class H(CSeCH) and Hashing 887
 Its codNBSymb C-4: its codNB2Symb 4:
Found 4:2:1:1:
Found 4:
Found 4:
Found C-4:Se-2:H-1:H-1:
Found C-4:
Found C-4:
not Found C(CCHN)(SeH)(H)2 iFind7 
Target angle value : 108
Angle between SE(center) and CB and HE
Atom1 SE Its Cod class Se(CCHH)(H) and Hashing 621
 Its codNBSymb C-4:H-1: its codNB2Symb 4:1:
Atom2 CB Its Cod class C(CCHN)(SeH)(H)2 and Hashing 673
 Its codNBSymb C-4:Se-2:H-1:H-1: its codNB2Symb 4:2:1:1:
Atom3 HE Its Cod class H(SeC) and Hashing 887
 Its codNBSymb Se-2: its codNB2Symb 2:
Could not find COD angle value and even default angle value.
The atoms in the target angle are: 
The inner atom SE
Its COD class is Se(CCHH)(H)
The outer atom 1 CB
Its COD class is C(CCHN)(SeH)(H)2
The outer atom 2 HE
Its COD class is H(SeC)
=========END OF PROCESS INFORMATION
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